Near as I can tell, you may have selected the wrong drive to repair/install windows on.
Normally, in systems that have both IDE and SATA drives installed, the system will check the IDE drive(s) for a boot sector first, and then the SATA drive(s). If you install(ed) a system on the IDE drive it will (normally) try to boot that drive first. It's also possible that, even if you repaired/installed on the proper drive, the boot sequence got reset by the repair/install procedure.
Many of those systems have an option in the BIOS which will specify the boot drive. To check, normally you need to press a particular key during start up to get into the BIOS. This key is most often DEL, but check with your computer/motherboard manual or website if DEL doesn't work.
Another work around that sometimes works, is to put the IDE drive on the secondary IDE port (if the motherboard has 2 IDE connectors) - preferably as a slave to the CD/DVD drive.
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